CISBIO Software Resources

A wide range of bioinformatics software and databases is available from the Bioinformatics Support Service. CISBIO has developed various pieces of software to facilitate its research into systems biology and bioinformatics. Some of these items are listed below:

CISBIO Software Resources

Proteomics Tools

SPiM Tools

SPiM Tools

  • PIM-SPIM, a tool for writing stochastic models of biological systems in plain English
  • A tool for translating sets of chemical reactions into SPiM programs (windows executable)

Microarray Data Analysis Tools

  • MMBGX - a tool to predict alternative splicing from Exon array data more accurately (publication)

Data Management Software

Commercial Imaging Software bought with CISBIC funding

Commercial Imaging Software bought with CISBIC funding (contact Martin Spitaler)

Commercial Data Analysis Software supported by the Bioinformatics Support Service

Commercial Data Analysis Software supported by the Bioinformatics Support Service (contact Geraint Barton)

Genome Visualisation

Genome Visualisation (contact Derek Huntley)

Theoretical Systems Biology Tools